Research
Содержание
Проекты
GeneQuery
Phenotype matching via transcritptional signatures.
ClusDec
Total expression deconvolution via clustering.
Kallisto/Salmon RNA-seq quantification pipeline
Practical considerations concerning the use of new generation super-fast RNA-seq quantifiers.
Whole-exome sequencing analysis and variant calling
Complete description of our pipeline for whole exome sequencing.
Useful scripts collection
Random scripts and code snippets.
Pipelines and How-to's
Setting up a Unix workstation for a bioinformatician
No soup for you.
Being effective when using R
R does suck, but you can make it suck less.
How to process a ChIP-seq experiment
Brief description of ChIP-seq processing for beginners.
How to analyze RNA-seq expression experiment
Brief description of RNA-seq processing for beginners.
How to analyze microarray expression experiment
Brief description of microarray processing for beginners.
De novo transcriptome assembly and annotation
Notes and tools to use when doing de novo transcriptome assembly.
Random notes
The title says it all, doesn't it?
Tools
bedtools
Various useful applications of bedtools.
UCSC tools
Using old-school genomic tools. Because ain't no school is like the Old School.
samtools
Some tools are better than other tools.
STAR
Using STAR for all things and applications.
Bowtie and bowtie2
Using Bowtie, if you absolutely must.
